PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_53C31B54B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 68aa    MW: 7718.84 Da    PI: 10.1891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_53C31B54B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.4e-191681874
                           --HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                     B3 18 lpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74
                           +pk++ae+h            +g + +++ l + d  g++W+++++y+++s++yvltkGW++Fvk++gL
  Traes_1BL_53C31B54B.1  1 IPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 68
                           8**********988888777532.34899**************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.688168IPR003340B3 DNA binding domain
PfamPF023621.5E-16168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-21168IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-14168No hitNo description
SuperFamilySSF1019368.5E-17168IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
IPKQHAEKHF PLQLPSAGAA VSGECKGMLL NFDDAAGKVW RFRYSYWNSS QSYVLTKGWS  60
RFVKEKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-301683192DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093104e-91BT009310.1 Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961326.15e-39PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ8RZX99e-38Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLW5A2122e-45W5A212_WHEAT; Uncharacterized protein
STRINGMLOC_38822.17e-41(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-31related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]